Savory Cottage Cheese Muffins are one of my favourites for an afternoon snack or breakfast. Made with chickpea flour, ground almonds, cheese, and broccoli, these gluten-free muffins are packed with protein to keep you satisfied. Freezer-friendly and perfect for meal prep.
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Cottage cheese muffins like woah
Guys, cottage cheese is having a moment right now, and I, for one, am here for it—big time. If you're looking for a protein bump, it's the perfect thing to add to your diet.
Today, we're making savory, high-protein egg and cottage cheese muffins. Imagine if a frittata and a gluten-free muffin had a dense, cheesy, broccoli-studded baby, and that's what we have here. They're so good.
Why I love these:
- These babies are packed with protein from no less than five different sources. We're talking eggs, chickpea flour, almond flour, cottage cheese, and sharp cheddar.
- They are so, so satisfying (see above), which means no more getting hangry 15 minutes after eating a muffin.
- They're the perfect vegetarian breakfast, snack, or whatever your heart desires.
And! They just so happen to be gluten-free, grain-free, and completely delicious. And with broccoli on board, too? I am one happy nutrition lady.
If you're not a fan of the texture of cottage cheese, no need to stress. It kinda melts right into the muffin, no lumpy bits in sight. You could, of course, call cottage cheese's more sophisticated European cousin into action (ricotta toast, ILYSM), but I firmly believe that cottage is the right cheese for this job.
Let's get down to business.
Featured comment:
OMG. Your recipes never disappoint! I was initially skeptical of broccoli in my baking but my wise husband said “trust her recipe, they’ve always been great” and they are!!
~ Sylvie

Gather your ingredients:
Most of the ingredients for these cottage cheese muffins are fairly easy to find in your regular grocery store. Here's what you'll need:
- Cottage cheese --> This is kinda the star of the show. I recommend you use the full-fat stuff.
- Eggs --> Four big guys, please and thanks.
- Almond flour --> This is usually pretty easy to find at the regular grocery store.
- Chickpea flour --> I do recommend picking this up, but if you can't find (you can order it here) it I'll discuss substitutes below.
- Cheddar cheese --> Or another sharp cheese of your choice.
- Broccoli --> We're using steamed florets all chopped up. Perfect to use up leftovers.
- Milk --> I forgot to include this in the ingredients shot above, but it's there!
- Baking powder --> This is our leavener.
- Salt and pepper --> Balance and flavor, yo!
Important!!
One thing that is ABSOLUTELY ESSENTIAL for this recipe is that you line the muffin tins either with parchment muffin liners, silicon muffin cups (mine are from IKEA, but these are similar), or, as a last resort, squares of parchment (I love this unbleached parchment paper) you cut out and stuff into the muffin tins.
Trust me on this one. These will stick to even the most well-greased muffin tins, and if you use regular paper muffin liners you'll lose about half your muffin stuck to the paper. I'm talking from experience here. Go for parchment.
Let's make Cottage Cheese Muffins!
Alrighty, friends, I'm going to talk you through the process step by step. No need to take notes—there's a printable recipe card at the bottom of this post.
Step 1: Prepare
Start by pre-heating your oven and lining your muffin tins. Remember, parchment or silicon muffin liners are absolutely essential for this recipe!

Combine the eggs, cottage cheese, and milk, and whisk, whisk, whisk! Then add the almond flour, chickpea flour, baking powder, salt, and pepper and give it a good stir.
Step 2: Add your chunky bits

Add the chopped broccoli and ยฝ cup of cheddar cheese to the bowl. Stir it up!
Step 3: bake your muffins
Spoon the cottage cheese muffin mixture into the lined muffin tins. If you're using squares of parchment, they won't stay down on their own, but when you drop the muffin batter in, they'll hold their shape.

Sprinkle the tops of the muffins with the remaining cheddar cheese and bake those babies for 25-30 minutes, until the muffins are puffed and golden.
How easy was that?!
Ok, now let's go through some tips and troubleshooting.
Tips and substitutions
Use parchment paper: You must, must, MUST use either parchment muffin liners or silicon muffin cups. This is non-negotiable. As a last resort you can cut squares out of regular parchment paper (as I have done here) and use those to line the tins.
Store leftovers in the freezer: Once your cottage cheese muffins are completely cool simply pop them into a freezer bag and they'll last for about three months. You can also keep them in the fridge for 3-5 days if you know you'll go through them sooner.
Mix up your fillings: If you don't like broccoli, feel free to replace it with another kind of vegetable! Semi-dried tomatoes are a fantastic addition to your savory muffins. Feel free to use a different kind of cheese in place of the cheddar. I've often used Parmesan instead, and Gruyere is also delicious.

A note about flour
Chickpea flour: If you don't have chickpea flour on hand, you can substitute another high-protein flour, such as soybean flour. Since only a small amount of this flour is used in the recipe, it's also perfectly fine to replace it with all-purpose flour if you prefer. If you *do* buy a bag of chickpea flour just for this recipe, I make these Chickpea Fries to use it up!
Almond flour: The almond flour is pretty essential for this recipe. If you don't have almond flour handy, you can also just whizz up one cup (about 150g / 5.5oz) of whole almonds in your food processor to make a fine powder.
If you make your own homemade almond milk, this recipe is great for using up the almond meal! Just make sure it's dried out before you use it to make these muffins.

Egg and Cottage Cheese Muffins with Chickpea Flour
Equipment
Ingredients
- 1 cup cottage cheese preferably full fat
- 4 large eggs
- ยผ cup chickpea flour
- 1 ยฝ cups almond flour or 1 cup / 150g whole almonds ground to a fine powder
- 1 teaspoon baking powder
- ยผ cup milk
- ยพ cup grated cheddar cheese divided
- 1 cup finely chopped broccoli florets from lightly steamed broccoli
Instructions
- Heat your oven to 200°C / 400°F.
- Line 9 muffin tins with parchment muffin liners, or squares of parchment paper.
- If you don't already have steamed broccoli on hand, start by lightly steaming some broccoli florets and stems. Rinse in cold water, squeeze out the moisture with a clean kitchen towel, and finely chop the broccoli. You should have 1 cup of chopped broccoli for this recipe.
- In a large bowl, whisk together cottage cheese, eggs, and milk.1 cup cottage cheese, 4 large eggs, ยผ cup milk
- Add chickpea flour, almond meal, and baking power and mix well.ยผ cup chickpea flour, 1 ยฝ cups almond flour, 1 teaspoon baking powder
- Now add ยฝ cup of grated cheddar cheese, and your chopped steamed broccoli florets.ยพ cup grated cheddar cheese, 1 cup finely chopped broccoli florets
- Spoon into 9 prepared muffin cups. Sprinkle the tops the muffins with remaining ยผ cup of cheese.
- Place in the oven and bake for 25 - 30 minutes, until the tops are golden and puffy. Remove from the oven and cool on a wire rack.
Notes
- Nutrition values are an estimate only.
- Parchment muffin liners or silicon muffin cups are essential for this recipe.
- Chickpea flour can be replaced with another bean flour or all-purpose flour if desired.
- Almond flour can be made by grinding 1 cup whole almonds in a food processor.
- Muffins can be frozen once completely cooled and stored for up to 3 months.









Emily
I will preface that I made a lot of additions to this recipe. I think this recipe is a great base. I used all chickpea flour since I didnโt have almond flour and it came out fine. However I noticed there was no salt, pepper, or seasoning to this. I ended up adding in some chicken bouillon, smoked paprika, pepper, hot sauce, garlic and onion. I streamed the broccoli in some chicken bouillon as well.
I think without any seasoning, especially salt, this would be a pretty bland recipe. But it was a nice recipe for using up my blended cottage cheese that wasnโt just โcottage cheese bowl with raspberries!โ
yasmine ogando
Can I sub the chickpea flour for coconut flour or any other flour?
Katie Trant
Hey Yasmine! I have tested this recipe with chickpea flour, soybean flour, and all-purpose flour. All three of those work just fine. I'm not sure how coconut flour would work out as I haven't tested it, but it would reduce the protein content in these muffins by just a little bit.
Sylvie R
OMG. Your recipes never disappoint! I was initially skeptical of broccoli in my baking but my wise husband said โtrust her recipe, theyโve always been greatโ and they are!!
Itโs always impressive to me how your recipes manage to be easy to make, delish and each thing is almost a full meal. Thanks again from my family!
Katie Trant
Aww, thank you so much. And thanks to your husband for the trust! I love these savory muffins with broccoli, so I' glad you tried them!
KO
Stumbled across this recipe looking to use up cottage cheese! Delightful, will make again! Followed recipe exactly - would add a bit of salt next time and spray the parchment liners (they stuck pretty solidly to the paper). I think would be good served with a little sprinkle of crushed red pepper. Thanks!
Katie Trant
Hey KO, so glad you enjoyed these as much as we do! I'm surprised they stuck to the parchment, but I guess all brands are not created equal. Crushed red pepper sounds great!
ra
Hi Katie! Do you think I could do oat flour instead of the almond flour?
Katie Trant
Hi Ra, oat flour and almond flour have very different consistencies. Oat flour tends to be quite thirsty and sucks up a lot of moisture from a recipe, whereas almond flour is fatty and is not absorbent. So while you can certainly try this recipe with oat flour, I have not tested this modification and I can't say how it will turn out. My guess is the muffins would be a bit more gummy in texture.
Pamela
Shouldn't it real sprinkle the remaining cheese, not cottage cheese on top of the muffins before baking
Katie Trant
Yes, you have used the entire amount of cottage cheese earlier in the recipe, so it is the remaining shredded cheese. This is specified in the insructions.
Martha
Actually, Step 6 says to sprinkle the remaining cottage cheese - which is confusing.
"Step 6: Sprinkle the tops of the muffins with the remaining cottage cheese. "
Katie Trant
Aha, I had to comb through the post to see what you were looking at. I was looking at the recipe card, where the ingredients and instructions are laid out. In that case the instructions were correct and step six was something completely different, so I was confused. I see how that you've spotted an error in the body of the post, which has been corrected. Keen eyes!
Chiara
Finally a real good savoury muffin recipe, and with tons of proteins, no less! Thank you so much for sharing. My husband hates broccoli (yeah, I don't know how our marriage is still going) so I used bacon, spinach and sundried tomatoes instead. Delish!
Katie Trant
Yay! So glad you enjoyed this as much as we do, Chiara. And regarding your husband, I feel your pain. My husband hates pancakes... I just don't know.
Abigail
So I nearly set my oven on fire making these yesterday (not the recipes fault)! We didn't have any parchment paper and I wanted to make sure I listened to your advice about lining the muffin tins, so I thought "Wax paper is basically parchment paper. I'll use that!" I'm sure you are already groaning, as the two can definitely NOT be substituted when baking at high temperatures, a fact I only just learned. Fortunately I noticed after only a minute or two that the oven was filled with smoke, and my dad helped me rescue the batter, transferring it to a different muffin pan.
Despite the near disaster, the muffins were delicious! I will definitely be making them again.
Katie Trant
Haha oh dear. Yeah... parchment and wax paper are NOT the same.
Frances
These are a favorite muffin, can't believe it took me so long to try them. Finally got some almond flour which I have not used much before. I think the higher calorie count on it stopped me from using it or making recipes that used it, but I have now changed my mind on that! I had to improvise a bit as I didn't have quite enough cottage cheese left so I took a gamble and used a bit of nonfat greek yogurt ( Fage, which is a thicker one,)and made up the difference. (60 grams worth) I also added only a bit over 1/4 cup shredded cheese total-(that was just to keep calories down for me,) and used white whole wheat flour instead of the chick pea flour, ( may get some for next batch) plus made smaller so- 12 of them with parchment type papers. ( Hopeful portion control!) They look beautiful and tasted amazing. I don't think I will ever be without them in my freezer.
Maggie
Best ever! Love them. Perfect freezer backup snacks.
Switched broccoli for zucchini to make daughter happier so I added parmigiano for a bit more kick.
Also tried loaf version when I was feeling lazy. It was perfect for picnic/summer salad dinner, warm or cold.
One of my fav recipes on your blog.
Sheri
Did not like the flavor of the chick pea flour. Might have liked them with regular flour.
Janet
Oh my goodness! How seriously good are these muffins? I made these today and they have all gone!!! Best savoury muffin ever. I am new to this website, but am liking what I have found - thank you, Katie for all the advice on nutrition and the lovely recipes.
Katie Trant
Yay, so glad you enjoyed them so much!
Nava Morris
I had to sub chickpea flour with almost 1/4c whole wheat flour, and cheddar cheese with mozzarella. I added onion powder, garlic powder, Trader Joe's chili lime spice mix, and salt. I also forgot to put in the baking powder. These were delicious!!! It's obviously a very versatile recipe. I hope they'll freeze well even w/out the baking powder. We'll see. Thank you for a great recipe.
Marilee
These are amazing! They are the perfect, healthy snack. I'm making them for the second time as I type this comment, and the only things I've done differently are add a bit of fresh black pepper and garlic powder, and a pinch of salt. Thank you for this wonderful recipe:)
K T
Mine did it turn out well. They are stuck to silicone cups. It took More than an hour to bake and still inside was not cooked appropriately. ๐
Katie Trant
Oh wow. More than an hour? Stuck to silicone? It sounds like something went terribly wrong. Without being there to troubleshoot it with you, I'm afraid I'm not much help to sort it out, but it does seem very unusual that an egg-based recipe would have to cook for that long.
Emelie
As soon as I saw you post this recipe, I had to make these! Love the idea of a savoury muffin. Why are these not more of a thing?? So many sweet muffins out there and Iโm usually not that into muffins generally. They turned out perfectly! Definitely will have these on regular rotation.
Katie Trant
I know, right?! They're so great for quick breakfasts or snacks, and it's nice to not have something sweet all the time.
Charlotte
Oh my goodness, these are so good! And just the perfect thing to have as a snack after work so that I can have a jog before dinner. (I didn't make any changes to the recipe)
Katie Trant
Yay, I'm so glad you like these! They're the perfect pre-workout snack ๐
Sandra Lea
These are delicious, I added a little diced red pepper but otherwise followed the recipe exactly. I love the texture and I'm always looking for easy grab and go breakfasts.
Katie Trant
Love the idea of adding red pepper to these!
Patricia
Loved these. I added a 1/2 tsp salt and a 1/4 tsp onion powder. I only had 2% cottage cheese, so that's what I used and they were really good. My muffin tins must be smaller because it made 12 muffins for me. I used silicone liners and they came out perfectly. I plan on wrapping and freezing most for quick breakfasts. Thanks for another great recipe.
Lindsay
Made these this morning with leftover broccoli and cottage cheese my kids have decided to hate all of a sudden. My 4yo had a great time helping me.
Both the 4yo and 10mo are currently devouring them and asking when we can make them again.
Heather Morrison
Do you think this recipe would work using WW cake and pastry flour instead of the almond and chickpea flour?
Katie Trant
Nope. That's a completely different recipe.
Andrea
Believe it or not I was actually planning to comment on the old recipe just before I saw that you had updated it. I've made it so many times over the years for my kids. It's such a fantastic recipe for a high calorie but healthy snack (something I searched high and low for on the internet to help give my underweight toddler a boost). The kids always devour them and I love being able to keep them at the ready in the freezer. I had previously substituted quinoa flour for the soy flour. Look forward to trying this new variation!
Dennis
This is a great recipe. I might try it with spelt flour, cause I have it, and love it.
themuffinmyth
I love spelt flour too. It'll change the protein profile a bit, but not too significantly.
Jess
Do these need to be refrigerated after baking? Not sure because of all the eggs and dairy.
Katie Trant
Hi Jess! Yes, they definitely need to be kept in the fridge. I actually keep mine in the freezer, and just pull out one or two muffins when I'm in the mood.
Pamela
Hey Katie,
this is great, i'm going to try it. My bf is a protein buff so he will definitely appreciate this. lol
Instead of the soy flour, do you think wholegrain flour + a scoop of protein OR skim milk powder could do the trick? I know soy flour is good for increasing the protein content without increasing the toughness but if not into the soy flour, do u know of anything else that could work. let me know what you think. or i can try it and let u know how it goes. ๐
I recently make high protein pancakes with wholegrain flour, protein powder, ricotta cheese, egg, milk, blueberries and chocolate chips. turned out great! although a little on the brown side due to protein content and maillard reactions! (yes 340!!) lol!
they were delish nonetheless!
themuffinmyth
There isn't that much soy flour in the recipe, so I'm sure if you tried replacing it with all purpose or whole grain flour it wouldn't change the structure all that much. Most of the structure is coming from the eggs in this case anyways since there isn't any gluten in the soy flour. Give it a try and let me know how they turn out! There was a lot of maillard browning in these as well!
heather
How do you think these would be with pureed squash or pumpkin ( I have bags of it in my freezer)?
themuffinmyth
I think that would make them really wet. The roasted squash is for adding tasty chunks (and isn't vital to the recipe, you could substitute lots of other chunky bits. Tomatoes? Olives?), pureed squash would drastically increase the moisture content. You could try it, but I'd personally save the puree for something else.